
Data collected from hospitals in South Africa's third most populous province highlight the patients who are bearing the burden of rising rates of carbapenem-resistant Enterobacterales (CRE) in the country, researchers reported yesterday in PLOS One.
Using routine clinical and laboratory datasets, researchers from Stellenbosch University analyzed all CRE episodes (including clinical episodes and carriage) at hospitals in Western Cape province from 2016 through 2020. With CRE becoming an increasing problem at hospitals across the country but little local data on it, they wanted to describe the epidemiology of CRE carriage and infection, examine patient demographics and resistance phenotypes, and identify factors associated with mortality.
A total of 2,242 CRE episodes (70.5% clinical episodes and 29.5% carriage) were identified over the study period. Among the 2,281 CRE isolates identified, the most common species were Klebsiella spp (72.1%), Enterobacter cloacae (15.1%), and Escherichia coli (5.5%). Affected patients were mostly male (52%) and had a median age of 31 years. Most CRE episodes occurred in hospitalized patients (93%) and were recorded in central hospitals (70%).
The proportions of CRE isolates that were non-susceptible to imipenem and meropenem were 77.6% and 74.6%, respectively, and resistance to other beta-lactam antibiotics exceeded 98%.
Factors associated with death
Among the 2,109 CRE episodes with available outcome data, 20.4% of patients died; crude in-hospital mortality rates were significantly higher for CRE clinical episodes (26.9%) than for CRE carriage episodes (6.4%).
Factors that showed a statistically significant association with in-hospital mortality were female sex (adjusted odds ratio [aOR], 1.40; 95% confidence interval [CI], 1.09 to 1.56)], adult patients (aOR, 1.76; 95% CI, 1.20 to 2.57), CRE isolation from a sterile specimen (aOR, 0.41; 95% CI, 0.32 to 0.53), and more than 3 days between hospital admission and specimen collection (aOR, 1.56; 95% CI, 1.11 to 2.18).
"It is important to identify these factors to improve patient outcomes, to guide treatment strategies, enhance infection prevention and control (IPC) measures and to address the broader public health and economic implications of CRE infections," the study authors wrote. "This ultimately impacts the greater fight against [antimicrobial resistance] and the improvement of health care."