News Scan for Sep 27, 2017

News brief

H5N6 strikes again in Vietnam; H7N7 found South Korea

Animal health officials in Vietnam have detected a highly pathogenic H5N6 avian flu outbreak in poultry, and South Korean authorities have found the H7N7 strain in wild bird droppings at a location in the south, according to media reports flagged by Avian Flu Diary, an infectious disease news blog.

In Vietnam, the virus was found on a family farm in Kon Tum province in the central part of the country after poultry deaths were first noted on Sep 22. District official ordered 4,700 ducks, geese, and chickens to be destroyed, as well as 3,000 eggs. The report said the same farm was hit by an H5N6 outbreak in 2016.

According to the World Organization for Animal Health (OIE), Vietnam's last H5N6 outbreak occurred in April.

Meanwhile, officials in South Korea's North Gyeongsang province said tests have found H7N7 in excrement in wild birds from the city of Yeongcheon. Tests are under way to assess the pathogenicity of the virus. Authorities have quarantined the area and placed a temporary ban on poultry movement.

South Korean officials last reported H7N7 in December 2016, when it appeared alongside H7N2 in wild bird samples.
Sep 26 Avian Flu Diary post

 

Nigeria launches yellow fever vaccination campaign

A Nigerian news report flagged by ProMED Mail, an infectious disease news message board, reported the beginning of a yellow fever vaccination campaign in Ifelodun, Nigeria, in response to a yellow fever case diagnosed there 2 weeks ago. Ifelodun is located in Kwara state.

Kwara is north of Lagos, Nigeria's largest city. Like many African metropolises, Lagos has been identified as a prime spot for a yellow fever outbreak because of its dense urban population and the presence of Aedes aegypti mosquitos.

Recent media reports from Nigeria have noted two yellow fever cases in Kwara state.
Sep 26 ProMED Mail post

In other yellow fever news, researchers reporting in Emerging Infectious Diseases describe a new test that distinguishes vaccine-related yellow fever cases from wild type yellow fever. The test was used during the recent outbreak of the disease in Brazil.

The recent outbreak was the country's largest in decades, with a total of 3,240 suspected cases reported, including 435 deaths. The new assays showed high sensitivity in identifying wild type yellow fever, which, the authors said, could be useful as more countries begin using a live-attenuated yellow fever vaccine.
Sep 26 Emerg Infect Dis study

 

Countries agree to tackle MERS

At a technical meeting this week in Geneva hosted by global health and veterinary organizations, health and agricultural leaders from 33 countries at risk for MERS transmission agreed to next steps taken to combat the coronavirus.

Though 80% of MERS-CoV (Middle East respiratory syndrome coronavirus) cases have been documented in Saudi Arabia, several countries in Africa and Asia are at risk because of the presence of dromedary camels, a known reservoir for the disease.

"It is in our common interest to address the disease in the human-animal interface, work across sectors and disciplines, together for the sake of our shared goals, healthy people and healthy animals," said Ahmed El Idrissi, MD, senior animal health officer with the United Nations Food and Agriculture Organization (FAO) in a World Health Organization (WHO) press release. "In doing so we recognize the importance of a One Health approach to health threats of animal origin."

Moreover, because MERS-CoV thrives in hospital settings, a traveler could bring the disease to any country. This was seen in South Kora in 2015, when a traveler infected dozens of staff and patients

According to the WHO, there have been 2,081 laboratory confirmed cases of MERS-CoV since 2012 in 27 countries. The case-fatality rate for MERS is 35%.
Sep 27 WHO press release

Stewardship / Resistance Scan for Sep 27, 2017

News brief

New report grades US restaurant chains on antibiotic use in meat supply

More than half of the nation's top 25 chain restaurants are taking steps to reduce the use of medically important antibiotics in their meat and poultry supply, according to a report today from a collection of consumer, environmental, and public health organizations.

The third annual Chain Reaction report, which assesses and grades fast food and fast casual restaurant chains on the progress they've made in eliminating the routine use of antibiotics in the meat they purchase, found that 14 of the 25 largest chains received passing grades on their efforts, up from 9 in 2016. Chipotle and Panera received "A" grades for their efforts. Eleven chains received an "F" for not taking any discernable action to reduce the use of antibiotics in their food supply.

The chains that received passing grades have adopted a range of antibiotic use policies. Some have pledged to buy only meat raised without any antibiotics ever, while other policies are limited to antibiotics that are also used in human medicine. Some chains will purchase meat only from suppliers that don't routinely use medically important antibiotics in their animals. And while Chipotle and Panera have fully implemented these policies, other chains have set timelines for full compliance with their commitments. The report grades the chains on the content of their policies, implementation, and transparency.

But most restaurant policies target antibiotic use only in chicken, the report notes, with few companies establishing similar policies for beef, pork, and turkey. Only Chipotle, Panera, and Subway (which received a "B+" grade) have taken steps to prohibit or reduce antibiotic use across nearly all of their supply chains.

“When it comes to chicken nuggets, we've seen incredible change in a few short years—but burgers and bacon are another story," Lena Brook, food policy advocate at the Natural Resources Defense Council (NRDC), said in a press release issued by Consumers Union. The two groups co-produced the report with the Food Animal Concerns Trust, Friends of the Earth, U.S. PIRG Education Fund, and the Center for Food Safety.

And while the report lauds the role that restaurant chains are playing in pushing the poultry industry away from routine antibiotic use, it also argues that the federal government needs to take more action to combat antibiotic misuse in the livestock industry. In particular, it argues that efforts by the Food and Drug Administration to end the use of antibiotics for growth promotion, and to collect data on the impact of those efforts, have not gone far enough.

Based on data from 2011, an estimated 70% of medically important antibiotics sold in the United States are for use in livestock and poultry production.
Sep 27 Chain Reaction III report
Sep 27 Consumers Union press release

 

Vietnamese study finds antibiotics don't benefit pediatric diarrhea patients

Empirical antimicrobial therapy for pediatric diarrhea in a high-usage, high-resistance setting provided no clinical benefit, and it even prolonged hospital stays in some groups, researchers reported yesterday in Clinical Infectious Diseases.

The prospective, observational, multi-center cross-sectional study of pediatric patients hospitalized with diarrhea was conducted in Vietnam, where all-cause diarrhea affects 7% to 11% of all children under the age of 5 and accounts for as much as 12% of all-cause deaths in this age-group. Although Campylobacter, Salmonella, and Shigella have been identified as the main diarrhea-causing bacteria, less is known about the epidemiology, resistance profiles, treatment, and associated outcomes of these bacteria in pediatric diarrhea patients. But empirical antibiotic treatment for diarrhea is common in Vietnam.

From May 2014 through April 2016, researchers recruited 3,166 children hospitalized at three hospitals in Ho Chi Minh City. More than one third of the children (34.6%) had acute bloody diarrhea, 56.1% had acute non-bloody diarrhea, and 25% were culture-positive for Shigella, Salmonella, or Campylobacter.

The use of antimicrobials among all patients was high, with 85.2% receiving empirical treatment following admission to hospital and before obtaining a bacterial culture result. Fluoroquinolones, which are recommended by the World Health Organization for treatment of pediatric diarrhea, were the most commonly used class of antimicrobial, accounting for 66.7% of all antimicrobials. Antimicrobial resistance (AMR) was highly prevalent on the isolated bacteria, mainly to fluoroquinolones and third-generation cephalosporins. 

The effect of antimicrobial treatment was assessed using two proxy disease outcome measures—clinical outcome at 3 days post-enrollment and duration of hospital stay. While more than 80% of patients improved or recovered at 3 days post-enrollment regardless of antimicrobial treatment, those given fluoroquinolones had a longer hospital stay compared with those not receiving an antimicrobial. In addition, antimicrobial treatment in those with non-bloody diarrhea was also associated with a longer hospital stay.

The authors say the findings highlight the need for adequately powered randomized controlled trials to be conducted to better assess the potential benefits and drawbacks of antimicrobial therapy for treatment of diarrhea. "These data will become essential for controlling antimicrobial usage during the present AMR crisis," they write.
Sep 26 Clin Infect Dis study

 

Study finds a 21% incidence of MDR pathogens in Fournier's gangrene

More than one in five patients with Fournier's gangrene were found to be infected with multidrug-resistant organisms (MDROs), according to a small study yesterday in the Journal of Infection.

San Diego researchers analyzed data from 59 patients who had Fournier's gangrene in their large academic hospital from 2006 through 2015. Patients had an average age of 56 years (range, 18 to 91), with risk factors that included obesity, diabetes, and having a compromised immune system. Fournier's gangrene involves dead or dying tissue (necrosis) of the scrotum, penis, or perineum.

The scientists were able to identify a causative organism in all but 2 cases, and 12 of those (21%) had an MDRO. The most common MDROs were methicillin-resistant Staphylococcus aureus (MRSA), in 8, followed by extended-spectrum beta-lactamase–producing Escherichia coli, in 3. Among aerobic gram-negative rod (GNR) bacilli isolated in the study, 32% were fluoroquinolone-resistant.

Among all the patients with gangrene, 15% lost an organ or other body part, and another 15% died.

The authors conclude, "This report highlights the emergence of MDROs as an important cause of these infections including MRSA and drug-resistant GNRs. Antibiotics should be chosen with broad-spectrum, anti-MDRO activity given the high morbidity and mortality associated with these infections."
Sep 26 J Infect study

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